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accession-icon E-MEXP-628
Transcription profiling of GATA-6 overexpression in mouse P19CL6 cells to identify targets of GATA-6 transcriptional regulation at early stages of cardiogenesis
  • organism-icon Mus musculus
  • sample-icon 3 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Expression 430A Array (moe430a)

Description

effect of overexpression of GATA-6 in P19 CL6 induced cells

Publication Title

Wnt2 is a direct downstream target of GATA6 during early cardiogenesis.

Sample Metadata Fields

Cell line

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accession-icon E-MEXP-1297
Transcription profiling of Xenopus dorsal root ganglia conditioned in vitro vs freshly dissected control
  • organism-icon Xenopus laevis
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon Affymetrix Xenopus laevis Genome Array (xenopuslaevis)

Description

Axonal regeneration is enhanced by prior conditioning peripheral nerve lesions. Here we show that Xenopus dorsal root ganglia (DRGs) with attached peripheral nerves (PN-DRGs) can be conditioned in vitro, thereafter showing enhanced axonal growth in response to neurotrophins, similar to preparations conditioned by axotomy in vivo. In contrast to freshly dissected preparations, conditioned PN-DRGs show abundant neurotrophin-induced axonal growth in the presence of actinomycin D, suggesting synthesis of mRNA encoding proteins necessary for axonal elongation occurs during the conditioning period, and this was confirmed by oligonucleotide micro-array analysis.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part

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accession-icon GSE10424
MyoD wt, Time Course
  • organism-icon Mus musculus
  • sample-icon 90 Downloadable Samples
  • Technology Badge Icon Affymetrix Murine Genome U74A Version 2 Array (mgu74av2)

Description

Time Course in vitro Differentiation of Myogenic Primary Myoblast into Myotubes for Ontario Genome Project 2004-05.

Publication Title

No associated publication

Sample Metadata Fields

Sex

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accession-icon GSE10430
MyoD-/-, Time Course
  • organism-icon Mus musculus
  • sample-icon 90 Downloadable Samples
  • Technology Badge Icon Affymetrix Murine Genome U74A Version 2 Array (mgu74av2)

Description

Myogenic Primary Myoblast Time Course in vitro Differentiation into Myotubes for Ontario Genome Project 2004-05.

Publication Title

No associated publication

Sample Metadata Fields

Sex

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accession-icon GSE3231
V6.5 Embryonic Stem Cell and Embryoid Body Time Course
  • organism-icon Mus musculus
  • sample-icon 66 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Expression 430A Array (moe430a)

Description

An 11-point time course study comparing V6.5 embryonic stem cells versus embryoid bodies. Time course 0 hours, 6 hours, 12 hours, 18 hours, 24 hours, 36 hours, 48 hours, 4 days, 7 days, 9 days, and 14 days.

Publication Title

Gene function in early mouse embryonic stem cell differentiation.

Sample Metadata Fields

Sex

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accession-icon GSE2972
R1 Embryonic Stem Cell and Embryoid Body Time Course
  • organism-icon Mus musculus
  • sample-icon 66 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Expression 430A Array (moe430a)

Description

An 11-point time course study comparing R1 embryonic stem cells versus embryoid bodies. Time course 0 hours, 6 hours, 12 hours, 18 hours, 24 hours, 36 hours, 48 hours, 4 days, 7 days, 9 days, and 14 days.

Publication Title

Gene function in early mouse embryonic stem cell differentiation.

Sample Metadata Fields

Sex

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accession-icon GSE3749
11-Point Time Course Study of Differentiating J1 Embryoid Bodies
  • organism-icon Mus musculus
  • sample-icon 66 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Expression 430A Array (moe430a)

Description

An 11-point time course study on differentiating embryoid bodies from a murine J1 embryonic stem cell line. The time course includes 0 hr, 6 hr, 12 hr, 18 hr, 24 hr, 36 hr, 48 hr, 4 days, 7 days, 9 days and 14 days.

Publication Title

Gene function in early mouse embryonic stem cell differentiation.

Sample Metadata Fields

Sex

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accession-icon GSE3780
FM95-14 Fetal Myoblast Differentiation Time Series
  • organism-icon Homo sapiens
  • sample-icon 60 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133A Array (hgu133a)

Description

Fetal myoblasts represent an important source of myogenic stem cells. Analysis of undifferentiated myoblasts and comparison to their cognate differentiated progeny will allow the ascertainment of genes that are important for maintaining myogenic stem cells.

Publication Title

No associated publication

Sample Metadata Fields

Sex

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accession-icon GSE3792
Osteoblast differentiation time course
  • organism-icon Mus musculus
  • sample-icon 42 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Expression 430A Array (moe430a)

Description

Differentiation Time Course; examination of osteoblast differentation by comparing cells exposed to growth factors with ctrl cells.

Publication Title

No associated publication

Sample Metadata Fields

Sex

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accession-icon GSE3823
Molecular Signatures Orchestrating fate of Human Hematopoietic Stem Cells Originating From Different Stages of Ontogeny
  • organism-icon Homo sapiens
  • sample-icon 42 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133A Array (hgu133a)

Description

Investigation of human hematopoietic stem cells gene expression patterns originating from different stages of ontogeny including fetal blood, cord blood, bone marrow, and mobilized peripheral blood in Lin-CD34+CD38- versus Lin-CD34+CD38+ populations.

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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