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accession-icon GSE40268
Expression data from 5 IFN type I-derived Dendritic Cells
  • organism-icon Homo sapiens
  • sample-icon 5 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Type I interferon (IFN) is a family of 15 cytokines (in human 13, 1,1) which exert several cellular functions through the binding to a common receptor. Despite the initial activation of the same Jak/Stat signalling pathway, the cellular response may be different depending on the type I IFN subtype. We investigated the activity of different type I IFN subtypes - IFN1, 2, 8, 21, and - on the differentiation of DC. Transcriptome analyses identified two distinct groups, the IFN/-DC and the IFN-DC. 78 genes, 7 chemokines and expression levels of cell surface markers characteristic of DC distinguished IFN-DC and IFN-DC. These differences are unlikely to impact the efficacy of T cell functional response since IFN2-DC and IFN-DC were equipotent in inducing the proliferation and the polarization of allogenic nave CD4 T cells into Th1 cells and in stimulating autologous memory CD4 or CD8 T cells. In contrast, IFN2-DC were found to be more efficient than IFN-DC in the phagocytic uptake of dead cells.

Publication Title

Differential activity of type I interferon subtypes for dendritic cell differentiation.

Sample Metadata Fields

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accession-icon GSE60359
ISG15 in regulation of interferon responses
  • organism-icon Homo sapiens
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Transcriptome Array 2.0 (hta20)

Description

We assessed how lack of ISG15 influences the levels of transcripts after IFNa stimulation.

Publication Title

Human intracellular ISG15 prevents interferon-α/β over-amplification and auto-inflammation.

Sample Metadata Fields

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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